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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9476750_9483799_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9476750 - 9483799
Intron Length:
7050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
QDREDQSILCTGESGAGKTE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462