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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9483903_9485626_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9483903 - 9485626
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TTATTCAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTTTTATACCA
Flanking Amino Acid:
HKGKKDTSITQGPSFSYGEL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
65.6
40.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
76.3
0.59
1
70.8
38.7
Minor 5ss
34.9
-1.7
3.3
50
46.2
Minor BPS
50.9
0.02
1.9
68.26
38.3

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462