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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9485648_9487734_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9485648 - 9487734
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
GAATGAATTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTAGGGTTAACT
Flanking Amino Acid:
SITQGPSFSYGELEKQLLQA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
58.5
0.19
1
52.9
45.6
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
49.4
0.03
2.5
76.34
46.1

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462