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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9487828_9488748_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9487828 - 9488748
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
TVKNDNSSRFGKFIRINFDV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
65.4
46
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
36.7
-1.5
2.7
43.1
38.3
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462