About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9488813_9490765_F

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
9488813 - 9490765
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTTGACAAACAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
GYIVGANIETYLLEKSRAIR
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
59
0.2
1.1
52.4
40.5
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462