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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9490865_9491837_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9490865 - 9491837
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ACATACTTAATT
Flanking Amino Acid:
LIAGASEQMRNDLLLEGFNN
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.2
26.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.1
0.74
0.7
81.2
30.8
Minor 5ss
42.2
-0.9
2.8
52.8
38.5
Minor BPS
67.5
0.63
1.5
76.35
40.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462