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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9494281_9494650_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9494281 - 9494650
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TCTTTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTAATCTAAAAT
Flanking Amino Acid:
TDQASMPDNTAAQKVCHLMG
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.6
36.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
84.5
0.78
0.7
78
35.1
Minor 5ss
51.7
0.06
2.8
74.3
41.9
Minor BPS
55
0.23
1.8
74.62
41.7

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462