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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9496689_9497592_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9496689 - 9497592
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAATT
5'SS Class:
major
3'SS Sequence:
TTTTATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCTTTTATAT
Flanking Amino Acid:
DKFVADLWKDVDRIVGLDQM
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
79
34.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.2
0.84
0.8
82
33.9
Minor 5ss
45.6
-0.5
2.9
63.5
42.1
Minor BPS
57.6
0.32
1.7
78.11
38.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462