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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9497787_9497953_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9497787 - 9497953
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTC
5'SS Class:
major
3'SS Sequence:
ATTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TACTTCTCATTC
Flanking Amino Acid:
RCIIPNHEKRAGKLDAHLVL
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.6
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.2
0.84
0.7
84.9
29.1
Minor 5ss
43.7
-0.7
2.9
52.8
44.6
Minor BPS
48.8
-0.1
1.8
59.03
40.5

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462