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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9498076_9498190_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9498076 - 9498190
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGAATC
5'SS Class:
major
3'SS Sequence:
TGTCTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ACCTCCTTAACA
Flanking Amino Acid:
NRIVFQEFRQRYEILAANAI
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
70.2
40.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79
0.65
1
76.5
37.5
Minor 5ss
37.1
-1.5
3.4
52.8
44.2
Minor BPS
79.7
0.93
1.2
77.53
39.6

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462