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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9498261_9498393_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9498261 - 9498393
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AGCACCGGAATT
Flanking Amino Acid:
MDGKQACILMIKALELDPNL
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
45.2
-0.2
2.1
60.8
42.9

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462