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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9500555_9500848_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9500555 - 9500848
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAAATTTACCT
Flanking Amino Acid:
LKELEQKHTQLCEEKNLLQE
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
76.4
28.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.9
73.8
36.7
Minor 5ss
35.1
-1.7
2.8
43.5
44.2
Minor BPS
49.3
0.03
1.8
67.93
42.4

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462