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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9501056_9501436_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9501056 - 9501436
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTCCAGAATT
Flanking Amino Acid:
EKKKMQQQMLDLEEQLEEEE
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.1
0.36
1
67.5
31.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
64.9
0.55
1.7
84.77
35.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462