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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9502351_9502784_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9502351 - 9502784
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGA
5'SS Class:
major
3'SS Sequence:
CTTACTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
AAATCCTTACTT
Flanking Amino Acid:
KHESMISELEVRLKKEEKSR
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
39.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
86.6
0.82
0.7
84.3
30.5
Minor 5ss
42.8
-0.8
2.9
56.9
47.1
Minor BPS
65.8
0.57
1.6
76.62
39.9

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462