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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9506398_9506497_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9506398 - 9506497
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCTA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTAACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GATGTGCTAACT
Flanking Amino Acid:
TLGSQLQDTQELLQEETRQK
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
63.4
0.3
1
55.8
39.2
Minor 5ss
40.8
-1
3.2
56.1
48
Minor BPS
45
-0.3
2.3
66.11
44.2

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462