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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9507296_9507567_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9507296 - 9507567
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATGAATT
Flanking Amino Acid:
LEKKQKKFDQMLAEEKNISS
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
82.4
29.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
87
0.83
0.6
83.4
25
Minor 5ss
40.1
-1.1
3.1
57.1
47.2
Minor BPS
48.8
-0
1.9
68.62
41.8

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462