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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9507781_9508452_F

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9507781 - 9508452
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTTATAACA
Flanking Amino Acid:
VSSKDDVGKNVHELEKSKRT
Intron Amino Acid Position:
1533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
58.3
0.19
1.2
59.3
40.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
64
0.43
1.6
77.35
32.8

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462