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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9509564_9510317_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9509564 - 9510317
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TCTTTTCAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAA
Flanking Amino Acid:
EAIKQLRKLQAQMKDYQREL
Intron Amino Acid Position:
1658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
65.5
0.35
1.1
68.8
35.4
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
56.6
0.2
1.6
68.07
38.6

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462