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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9510447_9510975_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9510447 - 9510975
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTTTACT
Flanking Amino Acid:
LEAELIQLQEDLAAAERARK
Intron Amino Acid Position:
1701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.8
0.54
0.8
66
34.8
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
86.3
1.23
1.4
100.6
26.7

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462