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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9511778_9512314_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9511778 - 9512314
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ACATCATCAAAT
Flanking Amino Acid:
SLEEQLEQEAREKQAAAKTL
Intron Amino Acid Position:
1841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.6
39.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.2
0.75
0.9
77.6
35.6
Minor 5ss
31
-2.2
3.3
40.9
45.3
Minor BPS
48.9
-0
1.9
66.65
43.1

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462