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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9512424_9513024_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9512424 - 9513024
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGAA
5'SS Class:
major
3'SS Sequence:
ATTTTTCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAATT
Flanking Amino Acid:
RKQAEQYKDQAEKGNLRLKQ
Intron Amino Acid Position:
1878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64
36.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.5
0.55
0.9
71.1
34.2
Minor 5ss
41.4
-1
3.3
55.5
48.7
Minor BPS
69
0.68
1.6
84.08
37.1

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462