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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9513198_9517244_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9513198 - 9517244
Intron Length:
4047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTGC
5'SS Class:
major
3'SS Sequence:
TTACTTACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTACTT
Flanking Amino Acid:
REVAALKSKLRRGNEPASFA
Intron Amino Acid Position:
1935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
58.1
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
0.9
73.8
35.3
Minor 5ss
35
-1.7
3.6
49.7
46.9
Minor BPS
64
0.52
1.8
84.41
36.8

Associated Gene:

Gene:
MYH11
Ensembl Gene ID:
ENSAPLG00000006168
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006591
9463919 - 9517380
53462