Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9523169_9523982_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9523169 - 9523982

Intron Length:

814

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTGCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GACACATTACCT

Flanking Amino Acid:

IVGDLLRKVGALESKLASCR

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

77.5

32.9

Major BPS

82.1

0.8

71.6

36.4

Major PPT

68.5

0.42

1.1

43.8

Minor 5ss

28.5

-2.5

3.2

31.7

42.6

Minor BPS

48.1

-0

1.9

64.15

45.3

Associated Gene:

Gene:

NDE1

Ensembl Gene ID:

ENSAPLG00000005964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006217

9521821 - 9531575

9755