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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9525203_9526251_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9525203 - 9526251
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGACAG
5'SS Class:
major
3'SS Sequence:
GCTTGCATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTCCCAAGATT
Flanking Amino Acid:
SVQRLKDEARDLRQELAVQQ
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
63.7
42.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
65.1
0.34
0.9
58
37.3
Minor 5ss
27.7
-2.6
2.8
30.5
42.7
Minor BPS
48.5
-0
1.9
71.93
39

Associated Gene:

Gene:
NDE1
Ensembl Gene ID:
ENSAPLG00000005964
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006217
9521821 - 9531575
9755