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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9526389_9526694_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9526389 - 9526694
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATGCTTGAAGG
Flanking Amino Acid:
QANDDLERAKRATIMSLEDF
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
83.7
0.76
0.8
81
30.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
48.7
-0.2
1.9
57.01
44.6

Associated Gene:

Gene:
NDE1
Ensembl Gene ID:
ENSAPLG00000005964
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006217
9521821 - 9531575
9755