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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9548758_9549529_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9548758 - 9549529
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCCCTTTAACA
Flanking Amino Acid:
LPPRLPLKMPACHTLLYVYN
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
79.9
36
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79.9
0.67
0.8
76.4
30.7
Minor 5ss
43.1
-0.8
3.4
65.3
45.9
Minor BPS
77.6
0.86
1.1
80.59
35.2

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026587
9541907 - 9558161
16255