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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9550851_9551513_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9550851 - 9551513
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TACTTCATAAAT
Flanking Amino Acid:
LLMSQSCWSSRSMSPNLSNR
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84
0.76
0.9
77.7
40.7
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
58.1
0.33
1.7
75.18
41.1

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026587
9541907 - 9558161
16255