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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9550851_9551579_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9550851 - 9551579
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TAAATCATACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCACGTTTAATG
Flanking Amino Acid:
LLMSQSCWSSRSTECPDPFA
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
61.9
0.27
1.1
53.2
45.2
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
49.3
-0.1
1.8
52.99
42.5

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412