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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9552590_9553545_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9552590 - 9553545
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAAAT
5'SS Class:
major
3'SS Sequence:
GCTTCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGTGCTAACAT
Flanking Amino Acid:
GATNKSLSLLSSEAISILQD
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
78.7
29.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.9
0.63
0.8
69.7
36.7
Minor 5ss
29.8
-2.3
2.9
40
45.6
Minor BPS
45
-0.3
2.3
68.51
48.1

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026587
9541907 - 9558161
16255
ENSAPLT00000005697
9541907 - 9563318
21412