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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9554779_9558121_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9554779 - 9558121
Intron Length:
3343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
GTCTTATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTATTTTGGACT
Flanking Amino Acid:
QTHEGTVPLLRQGSSILEES
Intron Amino Acid Position:
1026

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
72.3
0.5
1.1
75.7
37.5
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
63
0.49
1.4
79.85
36

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026587
9541907 - 9558161
16255