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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9555975_9556048_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9555975 - 9556048
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTCTGTATC
5'SS Class:
weak_major
3'SS Sequence:
ATAATTAGCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAGCTTGTAACC
Flanking Amino Acid:
IWLYKAVCEQLMLRMSDQIT
Intron Amino Acid Position:
870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.13
1.3
63.6
40.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
46.2
-0.2
1.7
51.7
46.1
Minor 5ss
44.4
-0.6
2.6
60.7
37.8
Minor BPS
48.5
-0.1
2
60.06
39.4

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412