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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9556229_9557601_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9556229 - 9557601
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATAAAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATAAAACT
Flanking Amino Acid:
IVREFLQAYHWCFSKDWDVT
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.2
0.34
1
56.1
43.6
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
52.7
0.16
2.1
81.76
39.7

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412