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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9557736_9558250_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9557736 - 9558250
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATT
Flanking Amino Acid:
NEMVICIPKRERTQEEIERT
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
77.9
0.95
1.1
86.64
33.8

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412