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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9558454_9558905_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9558454 - 9558905
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CTTGCATTAACG
Flanking Amino Acid:
LFEAIPDVLQVLECGEEKIL
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
81.9
0.72
0.8
77.2
37.1
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
62.3
0.25
1.9
68.33
45

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412