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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9559134_9559812_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9559134 - 9559812
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TTCATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTGTCCCTAACT
Flanking Amino Acid:
LMQKLCHVVKVVDTEAGKQI
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.3
0.77
0.7
80.6
31.2
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
77.5
0.94
1.6
92.97
35.4

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412