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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9560353_9561138_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9560353 - 9561138
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGCTGTTTAATT
Flanking Amino Acid:
LEELLGAIPQVVWIKGHGHK
Intron Amino Acid Position:
1267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
74.7
29.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
88.9
0.88
0.6
85
22.7
Minor 5ss
33.4
-1.9
2.8
39.2
46.2
Minor BPS
62.1
0.46
1.8
75.88
41.7

Associated Gene:

Gene:
MARF1
Ensembl Gene ID:
ENSAPLG00000005447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005697
9541907 - 9563318
21412