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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9575313_9576403_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9575313 - 9576403
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
ATTTCTGTAACA
Flanking Amino Acid:
LVDDAEVERLREKEEDKEMA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
74.9
0.56
0.8
67.7
33.7
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
67.8
0.55
2
81.43
34

Associated Gene:

Gene:
BMERB1
Ensembl Gene ID:
ENSAPLG00000005401
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005579
9575207 - 9597277
22071