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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9597316_9621520_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9597316 - 9621520
Intron Length:
24205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTTTCACACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCTTCTTTCACA
Flanking Amino Acid:
TEWKAEALGRNQLDIISMAE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
72
0.5
0.9
66
33.9
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
69.7
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
BMERB1
Ensembl Gene ID:
ENSAPLG00000005401
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030688
9576400 - 9621644
45245