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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9633332_9633492_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9633332 - 9633492
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCAACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTAGCACTAACT
Flanking Amino Acid:
TGLMYWPFVQLSNFVFVPVY
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
68
0.41
0.9
61.8
32.4
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
49.5
0.04
2
72.09
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005394
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025156
9633152 - 9641644
8493
ENSAPLT00000017927
9633152 - 9636644
3493
ENSAPLT00000005564
9633152 - 9636823
3672
ENSAPLT00000043112
9633152 - 9636969
3818