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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9633523_9636311_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9633523 - 9636311
Intron Length:
2789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGGGAA
5'SS Class:
major
3'SS Sequence:
ATTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTCATT
Flanking Amino Acid:
PIAERQPSAATGLMYWPFVQ
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
58.7
35.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
26
-2.8
3.5
38
46.9
Minor BPS
51.5
0.13
1.7
71.2
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005394
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017927
9633152 - 9636644
3493