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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9635926_9636370_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9635926 - 9636370
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCAGCTGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GAGCCTGTAACG
Flanking Amino Acid:
APVAVGAFYTDTDNLVACEY
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
46.7
-0.1
1.7
49.6
43.7
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
47
-0.3
2.1
50.61
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005394
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039647
9635870 - 9636969
1100