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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9640891_9644858_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9640891 - 9644858
Intron Length:
3968

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAAGCAAA
5'SS Class:
major
3'SS Sequence:
ATTTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
GLPTHKQMVDPTLAEMG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.2
68.9
42
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.6
0.62
1
73.5
36.5
Minor 5ss
30.1
-2.3
3.9
39.8
40.3
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005464
9640870 - 9666500
25631