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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9644933_9645299_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9644933 - 9645299
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
GTCTTTAACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GTGTCTTTAACA
Flanking Amino Acid:
EAMKMLEDNQRKAEEENEKK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
66.8
0.38
0.9
62.3
37.7
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
79.4
0.92
1.1
79.95
36.2

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019568
9644859 - 9656191
11333
ENSAPLT00000005464
9640870 - 9666500
25631
ENSAPLT00000035080
9644859 - 9662185
17327