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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9646146_9646986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9646146 - 9646986
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAGTCA
5'SS Class:
major
3'SS Sequence:
TTCTGGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TTGAATTTAGTT
Flanking Amino Acid:
EEEEESSQAYRLQNVGEQGH
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
63
37.9
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
79.5
0.66
0.9
72.9
37.4
Minor 5ss
36.9
-1.5
3.3
48
47.6
Minor BPS
49.7
0.06
1.8
69.42
42

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035080
9644859 - 9662185
17327
ENSAPLT00000019568
9644859 - 9656191
11333
ENSAPLT00000005464
9640870 - 9666500
25631