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Intron Name: Anas_platyrhynchos_platyrhynchos_15_9647134_9649175_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9647134 - 9649175

Intron Length:

2042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCGC

5'SS Class:

strong_major

3'SS Sequence:

GATTTTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

ATTTTCTTACAG

Flanking Amino Acid:

DTTLWLCRLFRYENGSAYYH

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

72.2

39.5

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

83.4

0.75

0.8

76.8

37.1

Minor 5ss

29.1

-2.4

2.8

35.6

Minor BPS

58.7

0.13

1.8

66.56

41.1

Associated Gene:

Gene:

PDXDC1

Ensembl Gene ID:

ENSAPLG00000005252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035080

9644859 - 9662185

17327

ENSAPLT00000019568

9644859 - 9656191

11333

ENSAPLT00000005464

9640870 - 9666500

25631