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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9649366_9651833_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9649366 - 9651833
Intron Length:
2468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
ATTTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTCCATCATT
Flanking Amino Acid:
TGLGQALCNQLGLPLSCMCR
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.3
0.84
0.8
82.3
33.4
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
54.8
0.23
2
76.71
39.7

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019568
9644859 - 9656191
11333
ENSAPLT00000005464
9640870 - 9666500
25631
ENSAPLT00000035080
9644859 - 9662185
17327