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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9651903_9652403_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9651903 - 9652403
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTGATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
NTMFGSQHQMDVALLDRLIK
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.8
0.49
1
67
42.5
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019568
9644859 - 9656191
11333
ENSAPLT00000005464
9640870 - 9666500
25631
ENSAPLT00000035080
9644859 - 9662185
17327