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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9654486_9654717_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9654486 - 9654717
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATAGAAGA
Flanking Amino Acid:
TLYRHEDPSLSLAAGLTSSQ
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.5
36.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91
0.92
0.6
89.3
19.4
Minor 5ss
39.6
-1.2
3
47.5
43.2
Minor BPS
42.4
-0.5
2
59.1
40.1

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019568
9644859 - 9656191
11333
ENSAPLT00000005464
9640870 - 9666500
25631
ENSAPLT00000035080
9644859 - 9662185
17327