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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_9654874_9657286_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9654874 - 9657286
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTGAACAA
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTATAAAAT
Flanking Amino Acid:
VSSTWLVGWLVEDELSSPVV
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.2
45.9
37.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
67.2
0.39
1.1
71.6
37.9
Minor 5ss
25.7
-2.8
3.1
27.5
37.7
Minor BPS
50.4
0.09
2
74.95
41.3

Associated Gene:

Gene:
PDXDC1
Ensembl Gene ID:
ENSAPLG00000005252
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035080
9644859 - 9662185
17327
ENSAPLT00000005464
9640870 - 9666500
25631