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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_965743_967415_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
965743 - 967415
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTCCTCACTT
Flanking Amino Acid:
SRKAQTRPSKGAEKTEVLSE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
74.7
0.56
0.8
74.4
29.6
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
67.7
0.63
1.8
88.16
37.4

Associated Gene:

Gene:
ARHGAP17
Ensembl Gene ID:
ENSAPLG00000010084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010551
965702 - 991704
26003